[Freesurfer] Convert Yeo's 17-network confidence map into MNI152 volumetric space

Mon, 01 Apr 2019 04:06:27 -0700 

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Dear FreeSurfer experts and users,


I would like to convert Yeo's 17-network confidence map into MNI152 volumetric 
space and I tried the following commands (but failed):
(1)

mri_surf2vol --so $SUBJECTS_DIR/fsaverage/surf/lh.white 
$SUBJECTS_DIR/fsaverage/label/lh.Yeo2011_17NetworksConfidence_N1000.mgz \
                --so $SUBJECTS_DIR/fsaverage/surf/rh.white 
$SUBJECTS_DIR/fsaverage/label/rh.Yeo2011_17NetworksConfidence_N1000.mgz \
                --lta $FREESURFER_HOME/average/mni152.register.dat --o 
Yeo2011_17NetworksConfidence.nii.gz

(2)

mri_surf2vol --surfval 
$SUBJECTS_DIR/fsaverage/label/lh.Yeo2011_17NetworksConfidence_N1000.mgz --hemi 
lh --fillribbon \
               --reg $FREESURFER_HOME/average/mni152.register.dat --template 
${FSLDIR}/data/standard/MNI152_T1_1mm_brain.nii.gz \
               --o lh_Yeo2011_17NetworksConfidence.nii.gz



Best,


Yang Hu

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