External Email - Use Caution Hi， I am sorry. In my recon_all folder, there isn't lh.white, rh.white,lh.pial and rh.pial files, so I can run below command freeview -v topo_defect_before/mri/brainmask.mgz \
topo_defect_before/mri/wm.mgz:colormap=heat:opacity=0.4:visible=0 \ -f topo_defect_before/surf/lh.white:edgecolor=yellow \ topo_defect_before/surf/lh.pial:edgecolor=red \ topo_defect_before/surf/rh.white:edgecolor=yellow \ topo_defect_before/surf/rh.pial:edgecolor=red \ topo_defect_before/surf/lh.orig.nofix:visible=0 Hope you can give me more advises. Thank you very much. Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> 于2019年4月11日周四 下午11:23写道： > check out > > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview > > > On 4/11/19 10:58 AM, Abby tang wrote: > > > > External Email - Use Caution > > > > Hello FreeSurfer Developers, I'm attempting to recon-all subjects but > > for some of my subjects I get the following error when I run recon-all > > command: CORRECTING DEFECT 0 (vertices=18460, convex hull=3400, v0=4) > > XL defect detected... Killed Linux abby-virtual-machine > > 4.15.0-47-generic #50-Ubuntu SMP Wed Mar 13 10:44:52 UTC 2019 x86_64 > > x86_64 x86_64 GNU/Linux > > I don't know how to check and amend ?h.orig.nofix. please give me some > commands in detail. > > Thank you for your help. > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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