How did you create the label? Is it a surface-based label? Ie, does it have
valid vertex indices as the first item in each label point in the label file?
On 4/24/2019 2:44 AM, Nillo, Ryan Michael R wrote:
External Email - Use Caution
Hello Freesurfer developers,
I am using the code below to generate the stats table for the ROI.
mris_anatomical_stats -l
/working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/label/rh.custom.label
-b subject rh white
However, when I run this command, I get this output:
limiting computations to label
/working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/label/rh.custom.label.
reading volume
/working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/mri/wm.mgz...
reading input surface
/working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/surf/rh.white...
reading input pial surface
/working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/surf/rh.pial...
reading input white surface
/working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/surf/rh.white...
table columns are:
number of vertices
total surface area (mm^2)
total gray matter volume (mm^3)
average cortical thickness +- standard deviation (mm)
integrated rectified mean curvature
integrated rectified Gaussian curvature
folding index
intrinsic curvature index
structure name
I am getting no values for any of the metrics listed above. Is this a bug?
Thanks in advance,
Ryan Michael Nillo
Staff Research Associate I
University of California San Francisco
Department of Radiology and Biomedical Imaging
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