The "locale" error is probably not a problem. Does
/media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white exist? What operating
system are you using?
On 4/24/2019 6:41 AM, Javier Navas wrote:
External Email - Use Caution
Dear freesurfer experts,
I want to create an annot from the output of PALM, the vertexwise file
corrected by TFCE-FWEp. The values of this files are in 'p-values'.
However, the mri_surfcluster has some problems: it could not recognize the
fsaverage and it shows a problem with the 'locale' also. I have permissions of
'write' and 'read' in the fsaverage folder. I use the last dev version,but also
it occurs with the stable version of FS 6.0.
I send you the command, with the outputs and the errors.
>$ mri_surfcluster --in
>./PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.mgz --thmin 0.99
>--hemi rh --subject fsaverage --sign pos --surf white --oannot
>/media/Data/PEH/NEW_FS_analysis/PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.annot
Could not set locale
No such file or directory
Could not set locale
thsign = pos, id = 1
version $Id: mri_surfcluster.c,v 1.60 2016/11/01 19:49:22 greve Exp $
hemi = rh
srcid = ./PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.mgz
srcsubjid = fsaverage
srcsurf = white
srcframe = 0
thsign = pos
thmin = 0.99
thmax = -1
fdr = -1
minarea = 0
xfmfile = talairach.xfm
nth = -1
subjectsdir = /media/Data/PEH/NEW_FS_analysis
FixMNI = 1
------------- XFM matrix (RAS2RAS) ---------------
/media/Data/PEH/NEW_FS_analysis/fsaverage/mri/transforms/talairach.xfm
1.00000 0.00000 0.00000 0.00000;
0.00000 1.00000 0.00000 0.00000;
0.00000 0.00000 1.00000 0.00000;
0.00000 0.00000 0.00000 1.00000;
----------------------------------------------------
Reading source surface /media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white
MRISread(): could not open file
No such file or directory
mri_surfcluster: could not read surface
/media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white
No such file or directory
>$ more error.log
Could not set locale
MRISread(): could not open file
Thank you in advance
--
/**********************************************************\
Francisco Javier Navas Sánchez
Laboratorio de Imagen Médica U.M.C.E.
Hospital General Universitario Gregorio Marañón
Dr Esquerdo 46, 28007 Madrid, Spain
Phone : (+34) 91 426 50 67 Fax: (+34) 91 426 5108
e-mail:jna...@hggm.es<mailto:e-mail%3ajna...@hggm.es> http://image.hggm.es
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