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I got recon-all errors at Talairach both on my own data and sample file (nii.gz) converted from the FreeSurfer installation tutorial. I reinstalled my platform and FreeSurfer 5.3.0 a few days ago, however the errors still exited. My code is as follows: export SUBJECTS_DIR=/home/zqn/freesurfer/subject recon-all -s ST_LS_004 -i /home/zqn/freesurfer/subjects/ST_LS_004.nii recon-all -s ST_LS_004 -all The errors appeared after the third command line was input and the errors are as follows: #-------------------------------------------- #@# Talairach 2019年 05月 13日 星期一 10:11:56 CST /home/zqn/freesurfer/subjects/ST_LS_004/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz Linux zqn-Precision-Tower-3620 4.18.0-18-generic #19~18.04.1-Ubuntu SMP Fri Apr 5 10:22:13 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux recon-all -s ST_LS_004 exited with ERRORS at 2019年 05月 13日 星期一 10:11:57 CST ----------------------------------------------- FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Platform: Ubuntu 18.04 recon-all.log: see attached file I am brand new to FreeSurfer and I read the recon-all.log but could not find out what the errors exactly are and the way to solve it. Any reply or suggestion is highly appreciated. Thank you so much! Qiannan Zhao
recon-all.log
Description: Binary data
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