External Email - Use Caution Hi,
can you open those surface files (both lh.pial and rh.pial of the subject for which it fails) in freeview to check whether they are OK? Does it fail only for a single subject or for all subjects you tried? Best, Tim > On June 26, 2019 at 12:31 AM Gwang-Won Kim <kw0...@nate.com> wrote: > > > External Email - Use Caution > > > > > > Dear there, > > I tried to process "recon-all -s <subject> -localGI" > But, there were messages below. > Thank you. > > --------------------------------------------------------------------------------- > < M A T L A B (R) > > Copyright 1984-2017 The MathWorks, Inc. > R2017b (9.3.0.713579) 64-bit (glnxa64) > September 14, 2017 > > > For online documentation, see http://www.mathworks.com/support > For product information, visit www.mathworks.com. > > > >> FREESURFER_READ_SURF [v 1.2 ] > ...reading surface file: lh.pial > ...reading triangle file > {Error using fread > Invalid size. > > Error in freesurfer_read_surf (line 126) > faces = fread(fid, Nfaces*3, 'int32'); > > Error in find_corresponding_center_FSformat (line 26) > [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial); > } > >> > ERROR: find_corresponding_center_FSformat did not complete successfully! > @#@FSTIME 2019:06:25:17:53:05 mris_compute_lgi N 2 e 214.78 S 11.73 U 120.56 > P 61% M 1765668 F 181 R 817088 W 0 c 28677 w 1859 I 34640 O 36752 L 9.66 9.41 > 9.10 > @#@FSLOADPOST 2019:06:25:17:56:40 mris_compute_lgi N 2 10.05 9.93 9.38 > Linux gwkim 2.6.32-754.14.2.el6.x86_64 #1 SMP Tue May 14 19:35:42 UTC 2019 > x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s 121202_FD49RU exited with ERRORS at Tue Jun 25 17:56:40 KST 2019 > > To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
