External Email - Use Caution Hi I have uploaded it in ftp, the file name is /home/abby/QDEC.tar.gz or QDEC.tar.gz. Thank you.
Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> 于2019年7月9日周二 下午10:42写道： > Can you tar or compress /home/abby/Desktop/qdecyoung/qdec/Untitled/ and > upload it here > ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming > Let me know when it is there and what the file name is > > On 7/9/19 6:35 AM, Abby tang wrote: > > > > External Email - Use Caution > > > > Hello FreeSurfer Developers, > > I want to compare the relationship between age and thickness, which is > > controlled the effect about sex,education and eTIV, so QDEC was used. > > However I met a problem when I use it, such as picture1. > > I get the wrong message, Error in Analyze: command failed: mri_glmfit > > --y /home/abby/Desktop/qdecyoung/qdec/Untitled/y.mgh --fsgd > > /home/abby/Desktop/qdecyoung/qdec/Untitled/qdec.fsgd dods --glmdir > > /home/abby/Desktop/qdecyoung/qdec/Untitled --surf fsaverage lh --label > > /home/abby/Desktop/qdecyoung/fsaverage/label/lh.aparc.label --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Avg-Intercept-thickness.mat > > > --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Avg-thickness-age-Cor.mat > > > --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Diff-Female-Male-Intercept-thickness.mat > > > --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Diff-Female-Male-Cor-thickness-age.mat. > > So I tried to put those to terminal, the feedback is: > > gdfRead(): reading /home/abby/Desktop/qdecyoung/qdec/Untitled/qdec.fsgd > > INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. > > Continuous Variable Means (all subjects) > > 0 age 80.3537 2.43637 > > 1 education 12.189 3.6099 > > 2 eTIV 1.33934e+06 242446 > > Class Means of each Continuous Variable > > 1 sexFemale 80.0568 11.4773 1265564.4638 > > 2 sexMale 80.6974 13.0132 1424768.7681 > > INFO: gd2mtx_method is dods > > Reading source surface > > /usr/local/freesurfer/subjects/fsaverage/surf/lh.white > > Number of vertices 163842 > > Number of faces 327680 > > Total area 65416.984375 > > AvgVtxArea 0.399269 > > AvgVtxDist 0.721953 > > StdVtxDist 0.195470 > > > > $Id: mri_glmfit.c,v 1.241.2.4 2016/12/08 22:02:40 zkaufman Exp $ > > cwd /home/abby/Desktop/qdecyoung/qdec > > cmdline mri_glmfit.bin --y > > /home/abby/Desktop/qdecyoung/qdec/Untitled/y.mgh --fsgd > > /home/abby/Desktop/qdecyoung/qdec/Untitled/qdec.fsgd dods --glmdir > > /home/abby/Desktop/qdecyoung/qdec/Untitled --surf fsaverage lh --label > > /home/abby/Desktop/qdecyoung/fsaverage/label/lh.aparc.label --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Avg-Intercept-thickness.mat > > > --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Avg-thickness-age-Cor.mat > > > --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Diff-Female-Male-Intercept-thickness.mat > > > --C > > > /home/abby/Desktop/qdecyoung/qdec/Untitled/contrasts/lh-Diff-Female-Male-Cor-thickness-age.mat > > > > > sysname Linux > > hostname abby-virtual-machine > > machine x86_64 > > user abby > > FixVertexAreaFlag = 1 > > UseMaskWithSmoothing 1 > > OneSampleGroupMean 0 > > y /home/abby/Desktop/qdecyoung/qdec/Untitled/y.mgh > > logyflag 0 > > usedti 0 > > FSGD /home/abby/Desktop/qdecyoung/qdec/Untitled/qdec.fsgd > > labelmask /home/abby/Desktop/qdecyoung/fsaverage/label/lh.aparc.label > > maskinv 0 > > glmdir /home/abby/Desktop/qdecyoung/qdec/Untitled > > IllCondOK 0 > > ReScaleX 1 > > DoFFx 0 > > Creating output directory /home/abby/Desktop/qdecyoung/qdec/Untitled > > Loading y from /home/abby/Desktop/qdecyoung/qdec/Untitled/y.mgh > > ... done reading. > > INFO: gd2mtx_method is dods > > Saving design matrix to /home/abby/Desktop/qdecyoung/qdec/Untitled/Xg.dat > > Computing normalized matrix > > Normalized matrix condition is 9294.65 > > Matrix condition is 1e+08 > > Found 148151 points in label. > > Pruning voxels by thr: 1.175494e-38 > > Found 139197 voxels in mask > > Saving mask to /home/abby/Desktop/qdecyoung/qdec/Untitled/mask.mgh > > Reshaping mriglm->mask... > > search space = 69257.619818 > > DOF = 156 > > Starting fit and test > > Fit completed in 0.338183 minutes > > Computing spatial AR1 on surface > > Residual: ar1mn=0.995542, ar1std=0.000996, gstd=6.054132, fwhm=14.256391 > > Writing results > > lh-Avg-Intercept-thickness > > maxvox sig=10.0394 F=48.3686 at index 13210 0 0 seed=1563457975 > > MatrixMultiplyD(): m2 is null > > break matrix.c:415 > > > > No such file or directory > > > > When same operations were did with other files, Qdec running normally. > > I don't know why. Please help me. Thank you > > Best regards > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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