Hi Marina
if you have a pial surface you can use mris_fill to fill the interior then
use that as a mask
cheers
Bruce
On Mon, 15 Jul 2019, Marina Fernández wrote:
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Dear experts,
I need to get a no-skull brain. The automated no-skull brain has many errors
and I was thinking that I could create it taking into account the gray
matter mask (we segment manually, so the mask is accurate) in such a way
that everything outside the gray matter mask is eliminated and everything
inside is maintained.
Do you know how can I create it?
Any idea will be welcome. Thank you very much.
Best regards,
Marina.
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