did you run recon-all -qcache ... on all your subjects? On 7/25/19 3:35 PM, Renew Andrade wrote: > > External Email - Use Caution > > Dear FreeSurfer experts: > I am processing in qdec 3 subjects with the GUI and I have this > terminal output. > > > Error in Analyze: Couldn't open > /Applications/freesurfer/subjects/IXI_22_Guys_T1/surf/lh.thickness.fwhm10.fsaverage.mgz > > or .mgh file. > lh-Avg-Intercept-thickness ----------------------- > Does the average thickness differ from zero? > Nuisance factors: Right-Hippocampus > 1.000 0.000 0.000; > > > > I have executed recon-all -s IXI_20_Guys_T1 -s IXI_22_Guys_T1 -s > IXI_25_Guys_T1 -qcache -target avgsubj20_22_25 -no-isrunning without > any errors. Also make_average_subject make_average_subject --out > avgsubj20_22_25 --subjects IXI_20_Guys_T1 IXI_22_Guys_T1 > IXI_25_Guys_T1 without any errors. > > The problem is that I only have files like “...fwhm10.fsaverage.mgz" > in one subject in this case IXI_25_Guys_T1 not in IXI_22_Guys_T1 or > IXI_20_Guys_T1. I do not know if that is a mistake of processing or > myself it seems by the output in qdec that I need files like > “...fwhm10.fsaverage.mgz” in every subject subdirectory “surf”. > > > Thanks for your help in advance! > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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