I'm not sure what the problem is. That recon-all.log file is for fsaverage and it says that it finished without error. Can you be more specific about the problem?
On 8/21/19 10:43 PM, liuxingze1993 wrote: > > External Email - Use Caution > > Hello，Dear FreeSurfer Developers, > > I’m a doctoral student from Xiangya 2^nd Hospital of Central South > University, and also a beginner to FreeSurfer. I'm attempting to > follow the steps descripted on ‘Practice Working with Data’ > (http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Practice) with > our own data, but I’ve met the same problem several times when I > programing the command ‘recon-all -all -i 61492283 -s Sub219’: > > (**ps: 61492283 is the T1 file I found after programing the command > 'dcmunpack -src . -scanonly.log') > > SUBJECTS_DIR /media/dell/AA32E/Data_prac/219/20181211/19470000 > > (**PS: 19470000 is the folder where the T1 located) > > FREESURFER_HOME /usr/local/freesurfer > > Loading source label > > Invalid argument > > ERROR reading > /media/dell/AA32E/Data_prac/219/20181211/19470000/fsaverage/label/lh.BA1_exvivo.label > > recon-all -s Sub219 exited with ERRORS at <local time here> > > I've searched the ‘lh.BA1_exvivo.label’ file in the related path and > no such file here. > > 1) FreeSurfer version: > freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c > > 2) Platform: Ubuntu14.04 LTS > > 3) uname -a: Linux dell 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 > 19:11:08 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux > > 4) recon-all.log: see attached > > Thank u for viewing, and I will be waiting here for your professional > advice ! > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
