External Email - Use Caution Doug,
I copied over files and ran using the -conf2hires flag, however, the orig.mgz/brainmask.mgz are resampled to 1mm isotropic not the native 0.8mm. Using the -hires flag maintains the orig.mgz/brainmask.mgz at native 0.8mm resolution. Is this expected when running -conf2hires? Jim -----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Greve, Douglas N.,Ph.D. Sent: Tuesday, October 15, 2019 11:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution better to use a patch I created for the HCP, see https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/readme On 10/15/19 12:13 PM, Alexopoulos, Dimitrios wrote: > > External Email - Use Caution > > We have data acquired at 0.8mm isotropic and would like to maintain > this resolution in the processing stream rather than FS resampling to 1mm. > > Is the command to do this 'recon-all -hires -all'? > > Are there any drawback to doing this? > > Jim > > ---------------------------------------------------------------------- > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If > you are not the intended recipient, be advised that any unauthorized > use, disclosure, copying or the taking of any action in reliance on > the contents of this information is strictly prohibited. If you have > received this email in error, please immediately notify the sender via > telephone or return mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
