I believe the problem is that they live in different voxel spaces (Doug, can you please clarify?) Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Marcel Heers <marcel.he...@gmail.com> Reply-To: Freesurfer support list <Freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, 4 December 2019 at 17:10 To: "Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] hippocampal subfields as masks for mri_segstats External Email - Use Caution Dear all, (dear Eugenio), I would like to use hippocampal subfields as masks for mri_segstats to retrieve intensity values. I am having problems loading the subfields file although it works fine with aseg.mgz. Does anyone know the cause? Thank you in advance! Best regards Marcel mri_segstats --seg $SUBJECTS_DIR/test/mri/aseg.mgz --ctab-default --sum output.txt --in $SUBJECTS_DIR/test/mri/T1.mgz mri_segstats --seg $SUBJECTS_DIR/test/mri/lh.hippoAymgLabels-T1.v21.HBT.mgz --sum output.txt --in $SUBJECTS_DIR/test/mri/T1.mgz ERROR: loading $SUBJECTS_DIR/test/mri/lh.hippoAymgLabels-T1.v21.HBT.mgz
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