Dear Steve, Can you please send us: - The segmentation command you used for a sample subject - A list of the files under the mri directory for that subject. Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Steve Petersen <marfne...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, 11 December 2019 at 03:54 To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Hippocampal subfields: exporting results External Email - Use Caution Dear Freesurfer experts, I used the freesurfer dev version to estimate hippocampal subfields using mode B (additional scan). All have worked fine although when I tried to export the results I can not find the txt file created This is the output rmnlab1:~ neucoga$ quantifyHippocampalSubfields.sh HIPOAMYG HipoAmyg_results.txt /Applications/freesurfer/subjects/4001T1 Gathering results from subjects in: /Applications/freesurfer/subjects/4001T1 Using the suffix name: HIPOAMYG And writing them to: HipoAmyg_results.txt Where is saved the HipoAmyg_results.txt file?? I have searched it and I can't find it... Excuse me for this basic question. Thanks in advance. Best regards,
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