Hi Mahdi
can you run mri_info in a Linux shell on that file and send us the entire
screen output?
cheers
Bruce
On Sun, 29 Dec 2019, mahdi mahdavi wrote:
External Email - Use Caution
Hi. I'm a medical student and I'm trying to use the QuickNATv2 MATLAB code for
structural MRI segmentation for a paper. However, at the last step when I want
to
execute the Run command for this program, it returns an error related to MRIRead
function from freesurfer. I'm, using windows so I Cloned freesurfer library from
github and defined its path for MATLAB. The error is: SWITCH expression must be
a
scalar or a character vector; the MRI data is a .mgz file:
Error in load_mgh (line 166)
switch type
Error in MRIread (line 94)
[mri.vol, M, mr_parms, volsz] = load_mgh(fspec,[],[],headeronly);
Error in RunFile (line 15)
DataVol = MRIread([DataPath,FileName]);
I've also tried using linux shell for windows 10 and installed the freesurfer
with
it but i still get the same error. I didn't find any helpful guides on various
forums so I'm mailing you hoping to find a solution cause I really need to run
the QuickNAT for a paper.
Regards
Mahdi
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