We don't have anything to denoise. You can try using ANTS DenoiseImage, but
using on the input might change where the surface is placed. We are
experimenting with using it inside the stream in a place where it is less
likely to bias the surface placement.
I don't understand the eddy current question as there should not be eddy
currents in a typical T1 or FLAIR
On 1/10/2020 2:53 PM, Adam Rytina wrote:
External Email - Use Caution
Hello all,
I want to apply the denoising and eddy current reduction on input images 3DT1
and 3D Flair. Are there any algorithms in Freesurfer to perform the noise and
eddy current reduction? Does recon-all involve denoising and eddy current
reduction? If so, in which processing stage?
Thanks a lot
Regards
Adam
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