I don't understand the question. To run recon-all through to the end
implies that you have run all the -autorecons
On 4/17/2020 2:53 PM, Billah, Tashrif wrote:
Right, I understand the rule about the scripts.
However, my original question was about the subfields
-hippocampal-subfields-T1/T2/T1T2
Again, can they be run with any of the autorecons separately? The
example shown here
<https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields>
integrates the subfileds with recon-all only but do no show
combination with any autorecon commands.
-Tashrif
.
------------------------------------------------------------------------
*From:* Billah, Tashrif
*Sent:* Friday, April 17, 2020 1:52 PM
*To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] Which autorecon uses
-hippocampal-subfields flags?
Douglas,
A little more elaboration would help. What is "it" and what are "them"?
-Tashrif
.
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