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Thanks Bruce, extremely helpful.
Can I just check that the "w" format is what is used by both the
lh/rh.pial and the lh/rh.white files? I only ask because my surf2surf
command outputs the exact output filename if the end is ".white", but if
it's ".pial" it outputs ".pial.w", which I find a little curious.
Ian
On 05/05/2020 16:34, Bruce Fischl wrote:
yes, check out options like:
--sval-xyz
if you need further help though I'll have to defer to Doug :)
Bruce
On Tue, 5 May 2020, Ian Hardingham wrote:
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Bruce, I've read the docs on mri_surf2surf - I wish to get surface
files out
(again, lh.pial, rh.pial, lh.white, and rh.white) rather than values for
something such as thickness - is there an option for mri_surf2surf to
allow
this?
On 05/05/2020 14:43, Bruce Fischl wrote:
Hi Ian
you can use mri_surf2surf to map surfaces between subjects, but
our atlas isn't really a surface. You can use the surfaces in
the fsaverage dir, but they are meant for visualization and are
much smoother than individuals
cheers
Bruce
On Tue, 5 May 2020, Ian wrote:
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Hi Freesurfers.
I have a subject S with recon-all having been run on
it.
I have the subject-specific surface files
/surf/lh.pial, rh.pial, lh.white,
and rh.white.
I would like an Atlas's lh.pial, rh.pial, lh.white,
and rh.white in subject
space.
Any helpers on how to achieve this?
Thanks,
Ian
--
Ian Hardingham
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