External Email - Use Caution Already Solved. Thank you so much!
Best, Qi On Fri, May 8, 2020 at 10:46 AM Yendiki, Anastasia <ayend...@mgh.harvard.edu> wrote: > If you're not happy with the output of tractstats2table and want something > custom, you can just do a search in the stats files. They're simple text > files. You can see how these files are named and what their contents look > like here: > > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics#Anisotropyanddiffusivityaveragedoveranentirepathway > > You'd have to search for the lines that contain subjectname, pathwayname, > and the name of the diffusion measure that you want. > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Zeng, Qi < > qi.z...@icahn.mssm.edu> > *Sent:* Friday, May 8, 2020 9:58 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] tracula stats summary > > > External Email - Use Caution > > Hi, > > Is it possible to collect all 18 tracts stats into a single file? > Has tried: > "tractstats2table --load-pathstats-from-file paths.txt --overall > --tablefile tractAll.txt" > Path.txt contains all the subjects' 18 paths' full path directory > Error message: > "all stats files need to have the same pathwayname. try verbose option > These are the pathwaynames found: ['fmajor', 'fminor', 'lh.atr', 'lh.cab', > 'lh.ccg', 'lh.cst', 'lh.ilf', 'lh.slfp', 'lh.slft', 'lh.unc', 'rh.atr', > 'rh.cab', 'rh.ccg', 'rh.cst', 'rh.ilf', 'rh.slfp', 'rh.slft', 'rh.unc']" > > Best, > Qi > > -- > > Ph.D. candidate > Icahn School of Medicine at Mount Sinai > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Ph.D. candidate Icahn School of Medicine at Mount Sinai
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