External Email - Use Caution Dear Chris and Douglas,
Thank you for the help! I would try the hires and precon_all. One more quesion, now I have a much better recon result from adult macaque brain. But when I performed MRI in 1 years old macaque. Recon-all barely can generate result, either with error or very bad segmentation. We are using TI 1100ms, TR3000/TE3.29 and FOV 128*128. Is there any way to segment young monkeys better? Thanks again. bests, Minqing Hi Minqing Jiang, Getting a macaque brain through Freesurfer requires a bit of manual tinkering. We have a description of how we do it on GitHub: https://github.com/VisionandCognition/NHP-Freesurfer There's also precon_all (https://github.com/recoveringyank/precon_all) which I haven't personally used yet, but I've seen results and it looks very promising! ?Good luck! Chris _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
