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Hello Freesurfer experts,

I’m analyzing subjects with a stroke in one hemisphere. Problem: recon-all 
breaks and gives an error at the white matter segmentation, what I understand. 
I don’t need the data from the lesioned hemisphere, I need the cortical 
thickness from the healthy one. Is there a possibility to only run one 
hemisphere through freesurfer? Or to project the healthy one on to the lesioned 
to have an intact brain and run recon-all succesfully?

Thanks,

Alina

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