Hi Hengameh You can try, but 3mm may be too thick for accurate surface models. Once you have too many voxels that contain both sides of a sulcus it is difficult to recover accurate surfaces. Note that our inputs don’t have to be mprage, but 3D acquisitions are highly recommended
Cheers Bruce From: [email protected] <[email protected]> On Behalf Of Hengameh Marzbani Sent: Friday, July 17, 2020 8:23 AM To: Freesurfer support list <[email protected]> Subject: [Freesurfer] The input for FreeSurfer External Email - Use Caution Hello Freesurfer developers, I have T1 weighted MRI images which are not MPRAGE. They are 2 dimensional sagittal or axial images with 3mm thickness (1.5 Tesla). Can I analyze these images by FreeSurfer? If yes, what tips should I consider? Thank you in advance, Best regards, Hengameh
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