sorry, I thought I answered this a while back. Try using -hemi lh
instead of -lh
On 7/18/20 1:22 PM, Alina Rojas wrote:
External Email - Use Caution
Hello Freesurfer community,
I was wondering if you could look at the e-mail below. Thank you!
Alina
Anfang der weitergeleiteten Nachricht:
*Von: *Alina Rojas <alinacol...@gmail.com <mailto:alinacol...@gmail.com>>
*Betreff: **One hemisphere recon-all ERROR*
*Datum: *13. Juli 2020 um 15:25:18 MESZ
*An: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
Hello Freesurfer community,
I'm attempting to compare the cortical thickness of one side of the
brain between stroke subjects. I got "ERROR: you must include rh
white and pial surfaces“. I used recon-all -sd
${TARGET_FOLDER}-subjid $SUBJECTID-i $T1-T2 $T2-qcache-all -3T
-T2pial -lh. I attached the recon-all.log file. Ist it a way to get
the aparc?
Thank you for your help,
Alina Rojas
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