Yes, just copy aseg.mgz and edit the copy. Then run mri_segstats. Look
in recon-all.log for the mri_segstats command that is used to create the
aseg.stats file. Adapt that command. The output will have an entry for
the lesion (make sure to use code 99 for the label id).
On 7/24/2020 1:43 PM, Manuel, Morganne wrote:
External Email - Use Caution
Hey Freesurfer,
I am new to Freesurfer. I wanting to use Freesurfer for measuring grey
and white matter volumes in Multiple sclerosis. However I am wondering
if there is a way to manually make a lesion mask for each individual
and then use the mask to subtract the lesion volume from the white
matter volume. We run recon we break it apart. So is there a certain
recon set I can use to add the lesion mask to tell Freesurfer to
subtract this volume from the white matter?
Many thanks,
Morganne
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
