Hi Rohin
Can you send us your command line and full screen output? Probably you need to
include th e-all directive to recon-all
Cheers
Bruce
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Rohin Singh
Sent: Friday, August 7, 2020 10:11 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Directories not populating after recon-all
External Email - Use Caution
Hello,
I am a student at the Mayo Clinic trying to do a project with fresurfer. When I
run recon-all, it only creates one file “001.mgz” in the MRI directory and the
rest of the folders are blank. I am not sure why this is as it completes the
process without any errors and I followed the set up instructions exactly.
Any help would be greatly appreciated.
Thanks,
Rohin Singh
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