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ERROR: MultiRegistration::loadMovables: images have different voxel sizes.
Currently not supported, maybe first make conform?
Debug info: size(1) = 1, 1, 1 size(0) = 1, 0.976562, 0.976562
error: No such file or directory
error: MultiRegistration::loadMovables: voxel size is different
/home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz.
However, I have checked the dimensions of both the T1w and the T2w and they
both have the same dimensions: 176×256×256. I do not know what is the
problem? and how can I fix the issue?
Sat Aug 22 15:19:38 EDT 2020
/home/dbermudez/Documents/subjects/00_0001
/usr/local/freesurfer/bin/recon-all
-all -subjid 00_0001 -i T1w_01_ras.nii -i T2w_01_ras.nii
subjid 00_0001
setenv SUBJECTS_DIR /home/dbermudez/Documents/subjects
FREESURFER_HOME /usr/local/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
build-stamp.txt: freesurfer-local-build-dev-20191112
Linux dbermudez-XPS-15-9550 5.4.0-42-generic #46~18.04.1-Ubuntu SMP Fri Jul 10 07:21:24 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize 8192 kbytes
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 1024
memorylocked unlimited
maxproc 62235
maxlocks unlimited
maxsignal 62235
maxmessage 819200
maxnice 40
maxrtprio 50
maxrttime unlimited
total used free shared buff/cache available
Mem: 15980220 2387924 10563004 363232 3029292 12883024
Swap: 2097148 0 2097148
########################################
program versions used
$Id: recon-all,v 1.601 2017/02/08 21:17:33 greve Exp $
$Id: lta_convert.cpp,v 1.10 2016/08/09 02:11:11 zkaufman Exp $
ProgramName: lta_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: lta_convert.cpp,v 1.10 2016/08/09 02:11:11 zkaufman Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_annotation2label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_annotation2label.c,v 1.32 2016/08/02 21:20:27 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_aparc2aseg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_aparc2aseg.c,v 1.54 2016/12/26 15:29:30 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_aparc2wmseg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_aparc2wmseg.c,v 1.6 2011/03/02 00:04:13 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_binarize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_ca_label.c,v 1.115 2016/10/22 17:31:36 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_ca_normalize.c,v 1.69 2016/10/22 17:30:57 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_ca_register.c,v 1.99 2016/10/22 17:31:24 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_cc ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_cc.c,v 1.39 2015/12/04 13:59:56 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_compute_overlap ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_compute_overlap.c,v 1.19 2015/10/20 20:07:19 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_compute_seg_overlap ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_compute_seg_overlap.c,v 1.18 2015/08/28 18:05:30 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_concat ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_concat.c,v 1.67 2017/02/16 19:49:35 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_diff ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_diff.c,v 1.37 2017/01/11 18:15:33 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_edit_wm_with_aseg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_edit_wm_with_aseg.c,v 1.25 2012/03/29 13:17:38 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_em_register.c,v 1.106 2016/10/22 17:31:12 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_fuse_segmentations.cpp,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_fwhm ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_fwhm.c,v 1.35 2016/11/01 20:25:24 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_info ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_info.c,v 1.87 2014/11/20 23:46:54 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_label2label.c,v 1.50 2016/12/10 22:57:43 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_label2vol ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_label2vol.c,v 1.46 2014/12/08 21:11:54 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_log_likelihood ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_log_likelihood.c,v 1.4 2011/03/02 00:04:22 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_mask ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_mask.c,v 1.24 2016/11/28 20:30:57 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_matrix_multiply ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:38-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_matrix_multiply.c,v 1.13 2011/03/02 00:04:23 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_normalize.c,v 1.92 2017/01/27 22:31:34 ah221 Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_relabel_nonwm_hypos ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_relabel_nonwm_hypos.c,v 1.2 2014/04/17 18:03:22 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_remove_neck ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_remove_neck.c,v 1.10 2011/03/02 00:04:24 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
$Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
$Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_calc.c,v 1.55 2016/09/27 18:50:16 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id$ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_diff ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_diff.c,v 1.20 2014/03/21 23:57:48 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_divide_parcellation ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_divide_parcellation.c,v 1.12 2012/10/24 19:50:06 maritza Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_segment.c,v 1.44 2016/10/22 17:29:37 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_segstats.c,v 1.122 2017/01/23 18:23:14 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_fix_topology.c,v 1.51 2016/10/27 19:43:58 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_jacobian ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_jacobian.c,v 1.11 2015/02/05 23:34:40 zkaufman Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_label2annot ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_left_right_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_left_right_register.c,v 1.2 2011/12/16 20:49:37 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_make_surfaces.c,v 1.172 2017/02/16 19:42:36 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_register.c,v 1.64 2017/02/07 19:04:44 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_sphere.c,v 1.62 2017/02/07 19:04:37 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_surface_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_surface_stats.c,v 1.10 2011/03/02 00:04:34 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_stats2seg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_stats2seg.c,v 1.9 2011/03/02 00:04:24 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_thickness ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_thickness.c,v 1.28 2012/11/27 17:41:26 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_thickness_diff ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_thickness_diff.c,v 1.16 2011/03/02 00:04:34 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_surf2surf ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_surf2vol ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_surf2vol.c,v 1.28 2014/12/08 19:49:02 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_surfcluster ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_surfcluster.c,v 1.60 2016/11/01 19:49:22 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mris_volmask ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mris_volmask.cpp,v 1.28 2016/11/18 19:19:29 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_tessellate.c,v 1.39 2016/07/20 21:05:04 zkaufman Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_vol2surf ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_vol2surf.c,v 1.68 2014/05/30 20:58:47 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_vol2vol ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_vol2vol.c,v 1.89 2016/06/22 22:33:40 fischl Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_voldiff ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_voldiff.c,v 1.6 2011/03/02 00:04:25 nicks Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
ProgramName: tkregister2_cmdl ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: tkregister2.c,v 1.133 2016/08/02 21:17:11 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
$Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2020/08/22-19:19:39-GMT BuildTimeStamp: Nov 12 2019 00:45:11 Id: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: dbermudez Machine: dbermudez-XPS-15-9550 Platform: Linux PlatformVersion: 5.4.0-42-generic CompilerName: GCC CompilerVersion: 40900
FLIRT version 6.0
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
#######################################
GCADIR /usr/local/freesurfer/average
GCA RB_all_2016-05-10.vc700.gca
GCASkull RB_all_withskull_2016-05-10.vc700.gca
AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
GCSDIR /usr/local/freesurfer/average
GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
#######################################
/home/dbermudez/Documents/subjects/00_0001
mri_convert /media/dbermudez/Fortress/507365_01/T1w_01_ras.nii /home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz
mri_convert /media/dbermudez/Fortress/507365_01/T1w_01_ras.nii /home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz
$Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $
reading from /media/dbermudez/Fortress/507365_01/T1w_01_ras.nii...
TR=1900.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, -0, 0)
j_ras = (-0, 1, -0)
k_ras = (-0, -0, 1)
writing to /home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz...
@#@FSTIME 2020:08:22:15:19:39 mri_convert N 2 e 9.23 S 0.09 U 9.13 P 99% M 29724 F 2 R 6132 W 0 c 45 w 80 I 632 O 21072 L 0.25 0.48 0.47
@#@FSLOADPOST 2020:08:22:15:19:49 mri_convert N 2 0.37 0.50 0.47
/home/dbermudez/Documents/subjects/00_0001
mri_convert /media/dbermudez/Fortress/507365_01/T2w_01_ras.nii /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz
mri_convert /media/dbermudez/Fortress/507365_01/T2w_01_ras.nii /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz
$Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $
reading from /media/dbermudez/Fortress/507365_01/T2w_01_ras.nii...
TR=3200.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, -0, 0)
j_ras = (-0, 1, -0)
k_ras = (-0, -0, 1)
writing to /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz...
@#@FSTIME 2020:08:22:15:19:50 mri_convert N 2 e 9.84 S 0.05 U 9.78 P 99% M 29792 F 0 R 6137 W 0 c 42 w 75 I 0 O 18896 L 0.37 0.50 0.47
@#@FSLOADPOST 2020:08:22:15:20:00 mri_convert N 2 0.69 0.57 0.49
#--------------------------------------------
#@# MotionCor Sat Aug 22 15:20:02 EDT 2020
Found 2 runs
/home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz
/home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz
Checking for (invalid) multi-frame inputs...
Checking for (invalid) multi-frame inputs...
/home/dbermudez/Documents/subjects/00_0001
mri_robust_template --mov /home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz --average 1 --template /home/dbermudez/Documents/subjects/00_0001/mri/rawavg.mgz --satit --inittp 1 --fixtp --noit --iscale --iscaleout /home/dbermudez/Documents/subjects/00_0001/mri/orig/001-iscale.txt /home/dbermudez/Documents/subjects/00_0001/mri/orig/002-iscale.txt --subsample 200 --lta /home/dbermudez/Documents/subjects/00_0001/mri/orig/001.lta /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.lta
$Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
--mov: Using /home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz as movable/source volume.
--mov: Using /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz as movable/source volume.
Total: 2 input volumes
--average: Using method 1 for template computation.
--template: Using /home/dbermudez/Documents/subjects/00_0001/mri/rawavg.mgz as template output volume.
--satit: Will estimate SAT iteratively!
--inittp: Using TP 1 as target for initialization
--fixtp: Will map everything to init TP!
--noit: Will output only first template (no iterations)!
--iscale: Enabling intensity scaling!
--iscaleout: Will perform intensity scaling and output results
--subsample: Will subsample if size is larger than 200 on all axes!
--lta: Will output LTA transforms
Setting iscale ...
reading source '/home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz'...
converting source '/home/dbermudez/Documents/subjects/00_0001/mri/orig/001.mgz' to bspline ...
MRItoBSpline degree 3
reading source '/home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz'...
converting source '/home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz' to bspline ...
MRItoBSpline degree 3
ERROR: MultiRegistration::loadMovables: images have different voxel sizes.
Currently not supported, maybe first make conform?
Debug info: size(1) = 1, 1, 1 size(0) = 1, 0.976562, 0.976562
error: No such file or directory
error: MultiRegistration::loadMovables: voxel size is different /home/dbermudez/Documents/subjects/00_0001/mri/orig/002.mgz.
Command exited with non-zero status 251
@#@FSTIME 2020:08:22:15:20:03 mri_robust_template N 21 e 7.30 S 0.16 U 7.14 P 99% M 144300 F 7 R 34623 W 0 c 30 w 8 I 1256 O 0 L 0.71 0.57 0.50
@#@FSLOADPOST 2020:08:22:15:20:10 mri_robust_template N 21 0.76 0.59 0.50
Linux dbermudez-XPS-15-9550 5.4.0-42-generic #46~18.04.1-Ubuntu SMP Fri Jul 10 07:21:24 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 00_0001 exited with ERRORS at Sat Aug 22 15:20:11 EDT 2020
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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