External Email - Use Caution Yes, I did replace question marks with left and right.
Thank you so much, Douglas. With regards Vittal On Thu, Sep 10, 2020 at 1:11 AM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > Are you using actual question marks or are you replacing them with l or r? > (you have to replace) > > On 9/9/2020 2:26 PM, vittal korann wrote: > > External Email - Use Caution > I did that, but the error remains the same. > >> mri_segstats --slabel CSRI001 ?h $SUBJECTS_DIR/CSRI001/label/?h.cortex >> --i $SUBJECTS_DIR/CSRI001/surf/?h.pial_lgi --sum >> h.aparc.pial_lgi-csri001.stats > > > > > > On Wed, Sep 9, 2020 at 11:32 PM Douglas N. Greve <dgr...@mgh.harvard.edu> > wrote: > >> You need to include the hemisphere in the --slabel arguments (maybe the >> 2nd one) >> >> On 9/9/2020 2:10 PM, vittal korann wrote: >> >> External Email - Use Caution >> Dear Douglas >> >> Thank you for your help! >> >> I got an error while executing the mris_segstats command. >> >> Command: >>> mri_segstats --slabel CSRI001?h >>> $SUBJECTS_DIR/CSRI001/label/?h.cortex.label --i >>> $SUBJECTS_DIR/CSRI001/surf/?h.pial_lgi --sum h.aparc.pial_lgi-csri001.stats >> >> >> >> ERROR: Option /usr/local/freesurfer//subjects/CSRI001/surf/rh.pial_lgi >>> unknown >> >> >> Please correct me if something wrong in the command line. >> Sorry for troubling you again. >> With regards >> Vittal >> >> >> >> On Wed, Sep 9, 2020 at 10:23 PM Douglas N. Greve <dgr...@mgh.harvard.edu> >> wrote: >> >>> You can use mri_segstats with the --slabel option, specifying the >>> ?h.cortex.label and using the gyrification as input >>> >>> On 9/9/2020 12:54 PM, vittal korann wrote: >>> >>> External Email - Use Caution >>> Thank you so much, Douglas. >>> >>> Could you please guide me to obtain the global mean gyrification index >>> for each subject? >>> >>> With regards >>> korann >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is addressed. If you believe this e-mail was sent to you in error and >>> the e-mail contains patient information, please contact the Mass General >>> Brigham Compliance HelpLine at >>> http://www.massgeneralbrigham.org/complianceline . If the e-mail was >>> sent to you in error but does not contain patient information, please >>> contact the sender and properly dispose of the e-mail. >>> >> >> The information in this e-mail is intended only for the person to whom it >> is addressed. If you believe this e-mail was sent to you in error and the >> e-mail contains patient information, please contact the Mass General >> Brigham Compliance HelpLine at >> http://www.massgeneralbrigham.org/complianceline . If the e-mail was >> sent to you in error but does not contain patient information, please >> contact the sender and properly dispose of the e-mail. >> > > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
