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Hello,
my command line is
mris_preproc --s ${subject} --hemi ${hemi} --meas ${measure} --target
${fsaverage}5 --out ${measure}/${hemi}.${subject}.${fsaverage}5.sm0.mgz
and my terminal output is
Transfering area for sub1's lh hemisphere ...
nsubjects = 1
INFO: turning on jacobican correction
tmpdir is area/tmp.mris_preproc.4084
Log file is area/lh.sub1.fsaverage5.sm0.mris_preproc.log
~/Downloads/freesurfer/bin/mris_preproc --s sub1 --hemi lh --meas area --target
fsaverage5 --out area/lh.sub1.fsaverage5.sm0.mgz
Linux localhost.localdomain 2.6.32-754.17.1.el6.x86_64 #1 SMP Tue Jul 2
12:42:48 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
tmpdir is area/tmp.mris_preproc.4084
Src lh fsaverage5.sphere.reg
Trg lh sphere.reg
mri_surf2surf --srcsubject sub1 --srchemi lh --srcsurfreg fsaverage5.sphere.reg
--trgsubject fsaverage5 --trghemi lh --trgsurfreg sphere.reg --tval
area/tmp.mris_preproc.4162/sub1.1.mgh --sval /sub1/surf/lh.area --jac --sfmt
curv --noreshape --cortex
MRISread(/sub1/surf/lh.fsaverage5.sphere.reg): could not open file
Source registration surface changed to fsaverage5.sphere.reg
Target registration surface changed to sphere.reg
$Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $
mri_surf2surf --srcsubject sub1 --srchemi lh --srcsurfreg fsaverage5.sphere.reg
--trgsubject fsaverage5 --trghemi lh --trgsurfreg sphere.reg --tval
area/tmp.mris_preproc.4084/sub1.1.mgh --sval /sub1/surf/lh.area --jac --sfmt
curv --noreshape --cortex
sysname Linux
hostname localhost.localdomain
machine x86_64
srcsubject = sub1
srcval = /sub1/surf/lh.area
srctype = curv
trgsubject = fsaverage5
trgval = area/tmp.mris_preproc.4084/sub1.1.mgh
trgtype =
srcsurfreg = fsaverage5.sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = lh.cortex.label
label-trg = lh.cortex.label
OKToRevFaceOrder = 1
UseDualHemi = 0
Reading source surface reg /sub1/surf/lh.fsaverage5.sphere.reg
No such file or directory
mri_surf2surf: could not read surface /sub1/surf/lh.fsaverage5.sphere.reg
No such file or directory
Appreciated for your help!
Lili
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