I don't know. Each command will have an fs_time output which will have a measure of the peak memory used, though it is not super accurate. Alternatively, I could add something to mri_fuse_segmentations to periodically print out the peak memory usage

On 10/13/2020 3:01 PM, Paul Wighton wrote:

        External Email - Use Caution

Hi FreeSurfers,

Is there any guidance on how to estimate the memory footprint of the Longitudinal steam?

We are trying to process the MacLaren test-retest dataset [1] (40 timepoints per subject) with the longitudinal stream in v7.1.1 and are running into memory errors during `mri_fuse_segmentations`.

Thanks,

-Paul

[1]: https://openneuro.org/datasets/ds000239/versions/00001

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Reply via email to