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Any comments from FS users to best best tackle these manual edits?
Jim
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________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Alexopoulos, Dimitrios
<dimitriosalexopou...@wustl.edu>
Sent: Tuesday, October 20, 2020, 10:25 AM
To: Freesurfer support list
Subject: [Freesurfer] Freesurfer edits
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External Email - Use Caution
Hi freesurfer editing experts.
Below are snapshots of the brainmask, aseg and wm.mgz for a 2 year old run
through FS 7.1.1
I’m hoping for feedback on the best way to make the relevant edits to the three
blue-circled regions.
1. In the superior regions I think control points will help to pick up
some WM to help fuill
2. In the left hemisphere medial prefrontal (gyrus rectus) regions, the
WM is overestimated. I presume removing WM voxels from the wm.mgz is the best
approach?
3. The left temporal pole region is missing GM/cortex and there really
isn’t any WM that would help with controls points or adding WM voxels. How can
I add GM to this area?
[cid:image007.jpg@01D6A6CB.3399D5E0][cid:image008.jpg@01D6A6CB.3399D5E0]
[cid:image009.jpg@01D6A6CB.3399D5E0][cid:image010.jpg@01D6A6CB.3399D5E0]
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