Hi James,
It sounds like your target filesystem does not support symlinks? The answer to
your question depends on how you are actually copying data, and you should
probably contact your IT about this, but if you’re using rsync to move recons,
you can supply the --copy-links flag to transform symlinks into referent
file/dir.
best,
Andrew
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Park, James"
<james.kunwoo.p...@emory.edu>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, October 26, 2020 at 3:03 PM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Troubleshooting: Question Regarding Copying Freesurfer
Output to Secondary Location
External Email - Use Caution
Hello,
My name is James Park, and I had a question regarding some issues with
Freesurfer.
We noticed that for the freesurfer recon-all output there were multiple aliases
files such as surf/rh.white.K among others.
Unfortunately we have been unable to copy these types of files to secondary
locations (i.e. a network server).
I have confirmed this is not an issue with the computer-network connection as I
have been able to copy other alias file types to the network location.
I was wondering if there is any workaround for this issue?
This was run on a Mac with macOS Catalina Version 10.15.7 using FreeSurfer
version freesurfer-darwin-macOS-7.1.1-20200811-8b40551.
Thank you for your help in advance.
Sincerely,
James Park
________________________________
This e-mail message (including any attachments) is for the sole use of
the intended recipient(s) and may contain confidential and privileged
information. If the reader of this message is not the intended
recipient, you are hereby notified that any dissemination, distribution
or copying of this message (including any attachments) is strictly
prohibited.
If you have received this message in error, please contact
the sender by reply e-mail message and destroy all copies of the
original message (including attachments).
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
