External Email - Use Caution Dear Freesurfer Developers,
I am sorry I did not include the error message. I am attempting to convert some dicom files to mgz via mri_convert command. However, for only 5 participants from my cohort I get the following error. Could you please help me to resolve the problem? (base) Georgias-MBP:HC21 georgina$ mri_convert 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm 001.mgz mri_convert.bin 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm 001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm... Starting DICOMRead2() dcmfile = /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm dcmdir = /Users/georgina/Downloads/HD/HC21 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm break DICOMRead.c:5228 Ref Series No = 201 Found 172 files, checking for dicoms ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491025102.dcm break DICOMRead.c:5228 First Sorting Computing Slice Direction Vs: -0.99478 0.102 0.0033 Vs: -0.994779 0.102 0.0033 Second Sorting IsDWI = 0, IsPhilipsDWI = 0 Counting frames nframes = 1 nslices = 82 ndcmfiles = 82 PE Dir = (dicom read) CTABreadASCII(/Applications/freesurfer/FreeSurferColorLUT.txt): could not open file Too many open files ERROR: reading /Applications/freesurfer/FreeSurferColorLUT.txt Loading pixel data ERROR: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992042.dcm is not a dicom file 70092 Requested element (18 9089) not found in DCM_GetElementVM Thank you in advance, Georgina
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