External Email - Use Caution solved it, turns out symlinks don't like relative paths (which I was using in the config file for tracula), changing those to absolute paths tracula finished with no errors
On Fri, 6 Nov 2020 at 11:38, Michele Valotti <michele.valo...@gmail.com> wrote: > Hi all, > I am trying to run tract segmentation on a scan and after running trac-all > -prep without errors, trac-all -bedp can't run because it can't find > dmri/data. Checking the dir I see a data.nii.gz but it looks like it's a > broken link, even though the dwi.nii.gz image (which data.nii.gz should > link to in my understanding) is in the folder. I have attached the log > which I have skimmed through without seeing any obvious problems. Any help > is greatly appreciated, > > Thank you, > Michele >
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