please send the command line
On 11/16/2020 7:20 AM, Alina Rojas wrote:
External Email - Use Caution
Hello Freesurfer experts,
I am attempting to register a ROI (.nii) to the surface of fsaverage
to get the statistical output on the cortical thickness. I followed
your instructions on *MailScanner has detected a possible fraud
attempt from "secure-web.cisco.com" claiming to be*
https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness
<https://secure-web.cisco.com/1vMR3HBqveQVdV1izVoGaJ5VcRtbR7HBn6ADoe1ai7ok5utz9wmCB_PLEjDtsOmyziziVBQRSmBgczrdyk56eX0vaBWBNP1iIevBdxOho3o-JJ64DuVK1J6XpzIFNVqqzBDHDrU6O2cYjWTNnglb4Ow4OIdXr5Qq28eboicyUSvLl2KmB0P0lQY9abQIfjX6hs_1Q1FvwX1Tx7YnGwsbJIgqcpDRG0dkvqZc0pgeiBQbnNjLadwozbHME2Ale8Kt0-V-I2Urmgq5zbEhzlAPvCA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FVolumeRoiCorticalThickness> but
after mri_vol2surf I get this message, I can’t visualize the ROI on
the surface. I I’m using Freesurfer 7.0.1. How can I solve this? Thank
you, Alina Rojas.
srcvol = M1_L.nii.gz
srcreg = tmp.dat
srcregold = 0
srcwarp unspecified
surf = white
hemi = lh
ProjDist = 0.5
reshape = 0
interp = nearest
float2int = round
GetProjMax = 1
INFO: float2int code = 0
INFO: using NIfTI-1 qform
Done loading volume
INFO: This REGISTER_DAT transform is valid only for volumes between
COR types with c_(r,a,s) = 0.
Input reg is register.dat
-------- original matrix -----------
1.00000 0.00000 0.00000 2.49380;
0.00000 0.00000 1.00000 -22.50500;
0.00000 -1.00000 0.00000 -9.53872;
0.00000 0.00000 0.00000 1.00000;
-------- original matrix -----------
Reading surface /fsaverage/surf/lh.white
Done reading source surface
Mapping Source Volume onto Source Subject Surface
1 0 0 1
using old
2 0.1 0 1
using old
3 0.2 0 1
using old
4 0.3 0 1
using old
5 0.4 0 1
using old
6 0.5 0 1
using old
7 0.6 0 1
using old
8 0.7 0 1
using old
9 0.8 0 1
using old
10 0.9 0 1
using old
Done mapping volume to surface
Number of source voxels hit = 75073
Writing to lh.fsaverage.M1_L.mgh
Dim: 163842 1 1
surfcolor: Subscript out of range.
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