External Email - Use Caution Dear Eugenio:
Thank you very much for your quick reply! Best Regards Xin > On Feb 8, 2021, at 9:59 AM, Iglesias Gonzalez, Juan E. > <[email protected]> wrote: > > > Dear Xin, > Please follow the instructions at > https://secure-web.cisco.com/1EYatGvoiBwVxNkmp2B8RbXY3nWpO66imPOW4-mVwGnQirpzU6ckb85ruF5-XWlCfsbF3RpfOaNAnsKToPxiXZv-8w3QyD9ivXRxuk-6V1ObJldItxSBbpizbw3-aKrUHyw1DXNRz6k7f-VKVzbJQJEAhDuOtiOZZRzzAANZiHzRzH1IB6WQMW2Hm8yCNMo704zdw2Hea4XWrwatusXVD4QfkaoWBEnMpEfAct4m4w1mVjP7waZGVbuIxmRfsA_OOW6ytpm9hU82YNAF__QoRUw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FHippocampalSubfieldsAndNucleiOfAmygdala > The new command is: segmentHA_T1_long.sh <baseID> [SUBJECTS_DIR] > Kind regards, > Eugenio > > Juan Eugenio Iglesias > Senior research fellow > CMIC (UCL), MGH (HMS) and CSAIL (MIT) > http://secure-web.cisco.com/1qVHfkGzU51IspGPhTx8HJb3x-csDeMUOKtsRgR5vURTi9VH4btRk9rZwEQYUgFv-AaW8fUXH5uvgzVTrJ5gbOPNjm-YKRdtKL7ScvCEnTUBOSgVbWWfaqSTvJpX51-N8RbhL2mTXySvOnqkgq8GkQ6Ic2I37oqNWtTApVUxr_NpvTCvH05Vt0u2AXPvntvDz1Hqw-4d28FfIHp_h9owjw7-jEXkoTgfHc-E3sn21b3mp6h-ZVBlMXs3HX-NzHyEyUsgiRbBrWV3TBnNZh-Pc-A/http%3A%2F%2Fwww.jeiglesias.com > > > > > From: <[email protected]> on behalf of Xin Qi > <[email protected]> > Reply-To: Freesurfer support list <[email protected]> > Date: Sunday, February 7, 2021 at 10:07 > To: "[email protected]" <[email protected]> > Subject: [Freesurfer] Can't find longHippoSubfieldsT1.sh > > External Email - Use Caution > > Dear Freesurfer Community, > > I ran the Freesurfer longitudinal pipeline for my subjects (1.5T, T1_data, 6 > timepoints each). Now I want to continue with the longitudinal segmentation > of hippocampal > subfields: > MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" > claiming to be > https://secure-web.cisco.com/1K7bnnF1liM9nEu54_GUeNb3MXa0aKaEV4-Mk91cqBRjfLt9xtraKQZ1BN75910azt9peLFuwdolZApWPNUdbW7SJttvsgo1cvVFDzHaNEk6XrbMCjz0GVlAAeK4YLRUL3BVxG3fyD1XgNFX3lUUyrV5cwduhlTpPIjEJE4NbQuE6J6kxw3nGXm99KDrbJmZibrRexL1w_E_5I0IO8k5-87DDBHs8m6lCl7AT7ZF4XNJse3XLuugzjAwuOxoZXdwlj8exKTk_H59kvMXVdOKO7A/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLongitudinalHippocampalSubfields > > However, when I want to run the command: > longHippoSubfieldsT1.sh <baseID> > > I get the error message "bash: longHippoSubfieldsT1.sh: command not found" > > First thing I did, was checking the Freesurfer folder for the longHippo..sh > file. > I am using FS 7.0 but the file is not available. > > So my questions: where can I get the file longHippoSubfieldsT1.sh or what > else can I do to proceed with the HC subfield segmentation? > > Thanks a lot for your support and looking forward to your reply. > Best > Xin > _______________________________________________ > Freesurfer mailing list > [email protected] > https://secure-web.cisco.com/1RPYFPXBf79rD1VGQ4al2jkzrRHrRXS9La6AUq7XK8aOcy2F74Hk2WbJMJJejvdMC9sE4pqBNNiDrv_m6UXgT26lTUSSvW2--cZjicOsVDWSXrHKw5GQlsgBWkjFpO4_q-9mbCFJALqGPP7z4U_whq7oUmyWJ37NmX2dWpvrPaBuaTyD8Rq3IRTZHSk7WL1K_IgHJgrqjRbDUPURtAMaa4xFp4dBiuOMegPgcWamPS1E22ZbeHpXCGQLFKUpqiT0fz9WaAzh5jdtNVY2ejbT-zg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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