External Email - Use Caution Hi Bruce,
That did the trick! Thank you very much. Fischl, Bruce <[email protected]>, 8 Şub 2021 Pzt, 23:23 tarihinde şunu yazdı: > Hi Gunes > > > > Just set it in your environment before calling mri_em_register. For > example > > > > setenv OMP_NUM_THREADS 1 > > > > in csh/tcsh or > > > > export OMP_NUM_THREADS=1 > > > > in bash. I think you can also give -openmp 1 to recon-all (hopefully that > will also work) > > > > cheers > > Bruce > > *From:* [email protected] < > [email protected]> *On Behalf Of *gunes > *Sent:* Monday, February 8, 2021 6:04 PM > *To:* Freesurfer support list <[email protected]> > *Subject:* [Freesurfer] Number of threads in mri_em_register > > > > * External Email - Use Caution * > > Dear freesurfer developers, > > > > I'm using freesurfer v5.3.0 and having problems with the number of threads > opened by `mri_em_register`. It automatically opens up as many threads as > there are in the system, but I need to limit that. > > > > I have seen this post with the same problem: *MailScanner has detected a > possible fraud attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/11tdaInnqYtUWRkjKA3OhISAx7uqCwtpHf_YlHq0sFkLrxPg91dcsgcrxvVNqXJa2YdK0HuDmhfxLVXOmiyWY2mbDEcEqRaeZoQe4puRq_ngrld1W3B5NaZofNtk-67epE_7fi90hZO_b3N82p3RuJgceBXr0uJ_0sXvri9kyEtE3w5LDM3WKLWf7bRdnT50MHRXCjl5MNU8mfVTwbINGDzn3uI6NSn09i-tSwtePjou-I0hbDXp0w6KpVjpkLvb_2t7sXqmxDhcRizIVoDsx_Q/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg41604.html > <https://secure-web.cisco.com/19w3ZWmagO9QFaobk1ln0Z4sQQWaHjFCCO6n7ZqpGmL6VZAX0w21CCEAaa33RUpdWANy9uLXqTHg-0cjdlk5HCted7Gp7uDpg3tO3_DmxRhvJenYCKZQREEaLmxycNmE2D8Ox3UhspmsCAalRJv-l1c8vIoOqxQWsnBkHxmxAPQl7ByUL9_FboPsVaZwzquIDs-URt8xUqzTTSz4YTXd6Fcw92VFKXs_mUZDOxtaC2LORNpipqDBbkyVkRxeUsP-LMTSSuAGFNWOinnV1yjoM2g/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg41604.html> > > > > In the end, it seems to be solved by setting OMP_NUM_THREADS to 1 in > the mri_em_register script, but it is a binary file. I don't know how to > set it. > > > > Kind regards, > > Gunes > _______________________________________________ > Freesurfer mailing list > [email protected] > https://secure-web.cisco.com/1eDktoIdfGbGmm0m5Dv6McNft3kvF825zFnb15LaPR2JR7QCEC7lZd48_XIksg8XdSuoxfwyCFPLxPbqDXOcOgqV4UmNzqRWotkVYQjphDHlqmAIf3NIcaM_5G-C4p7P2SxL5su0LmJrv2Y3DvL1wk2U20CxlnjQMfK7K1O5TCoBXXFAn3jC5rwI06CnUPfARk4b-pQldh5Artgoinl239ncTv2LSlV5DpaEUZUWjRkiwlr9K-MO-k7BBhoNVKxftBt3yz3d7s3gf4cz_2ouE5Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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