External Email - Use Caution Hi,
We are finding that the skull-stripping in standard FS 7.1.1. in a few of our 3yo subjects is a little aggressive and is removing brain from the brainmask primarily in the occipital pole region. We decided to use the "cloning to T1 method", using the Recon Edit tool in Freeview for adding brain back to the brainmask.mgz. Once the revised brainmask.mgz is re-saved with the same file name, what command needs to be run to regenerated the entire pipeline? We originally ran: recon-all -s -i -hires -all Do we run the same command again or should we use: recon-all -s -make -hires all Thanks. Jim ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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