External Email - Use Caution Hi, Dr. Iglesias Gonzalez
Here is the full log, Thanks Best, Wei On Mon, Mar 1, 2021 at 10:33 PM Iglesias Gonzalez, Juan E. < [email protected]> wrote: > Dear Wei, > > Can you please provide us with the full log? > > Cheers, > > /E > > > > > > Juan Eugenio Iglesias > > Senior research fellow > > CMIC (UCL), MGH (HMS) and CSAIL (MIT) > > http://secure-web.cisco.com/1QG7uGIHTOdZ2Mb_tpU68iZ_owRYsTQl1DBCO6QrSAb64Kb0Rzx4ZOx3LNeUg8cYWEvLm-ybTeV1JGTHuVgY1mPHQkB2CmTV1abh94ZqQMIdEuu9BWHGad2nW93ap3bPSQo7vfA2A8K_RNQcgq4iyn6EPQbMinxBF5sIhnLQ8afvzuSH1H7FKJPfFaASueXmm0wAWzLcQfenpnINPHN0pxmolEUVEIxDvF6S9Sy1lCrwLo2vFrA_dVs0tjaG_TwJXCb4SCij-8ijuqTNnJ26T-A/http%3A%2F%2Fwww.jeiglesias.com > > > > > > > > *From: *<[email protected]> on behalf of Wei Shao < > [email protected]> > *Reply-To: *Freesurfer support list <[email protected]> > *Date: *Monday, March 1, 2021 at 21:14 > *To: *Freesurfer support list <[email protected]> > *Subject: *[Freesurfer] Hippocampal subfield segmentation > > > > * External Email - Use Caution * > > Hi, Freesurfer expert > > > > I tried Hippocampal subfield segmentation with an additional T2 scan by > using FS7.1.0 > > > > Here is the log error massage > > > > Attempted to access cropping(1); index out of bounds because > numel(cropping)=0. > > Error in applyCropping (line 7) > > > > Error in segmentSubjectT1T2_autoEstimateAlveusML (line 950) > > > > MATLAB:badsubscript > @#@FSTIME 2021:03:01:20:38:39 > run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 e 243.67 S 3.47 U > 220.01 P 91% M 1248336 F 144 R 909119 W 0 c 49601 w 14948 I 320352 O 429920 > L 30.66 34.91 35.10 > @#@FSLOADPOST 2021:03:01:20:42:43 > run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 47.20 43.27 38.55 > Linux gra813 3.10.0-1127.8.2.el7.x86_64 #1 SMP Tue May 12 16:57:42 UTC > 2020 x86_64 GNU/Linux > > T2 hippocampal subfields exited with ERRORS at Mon Mar 1 20:42:43 EST 2021 > > For more details, see the log file > /home/weishao//BAY11958/scripts/hippocampal-subfields-T2.T2.log > > > > Could you tell me how to fix this? Thanks. > > > > > > Best, > > Wei > _______________________________________________ > Freesurfer mailing list > [email protected] > https://secure-web.cisco.com/1yoXS6dKZ-NgQmNn6ZWsu7E6Fy28mmAvwujVOWjd0TXC-2rnYtbfOToNdj8FNRMl9_r5G8pvA0y52cLEZFh6ArDsWdkuOwbOa_KluGStvj2OQyVepzLH4HE5ODIpzKRsK15XP970jorSINqsZRyBgnFcxFZJRes9cFrFSURI2jqckcNTD2AWH86HiraJqydQcHdqq2GxQ-BMsVtdOi98xqbXk3kJAxAf1hR-bNclwgewkP4DdSlUYTpBkzn5HP-hCNXbNCr3uIvKMC0MLJz68nQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
slurm-45279731.out
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