External Email - Use Caution Hello,
I am trying to run the recon-all function and the whole process is completing within a minute or so. I was told that the whole process would take between 6-24 hours. This is the output I am getting after entering the command: Akilas-MacBook-Air:Sub01 akilasekar$ recon-all -s sub_01 -i sub1.fspgr.nii Subject Stamp: freesurfer-darwin-macOS-7.1.1-20200811-8b40551 Current Stamp: freesurfer-darwin-macOS-7.1.1-20200811-8b40551 INFO: SUBJECTS_DIR is /Applications/freesurfer/7.1.1/subjects Actual FREESURFER_HOME /Applications/freesurfer/7.1.1 Darwin Akilas-MacBook-Air.local 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 /Applications/freesurfer/7.1.1/subjects/sub_01 \n mri_convert /Users/akilasekar/Desktop/Cambridge/Data/Sub01/sub1.fspgr.nii /Applications/freesurfer/7.1.1/subjects/sub_01/mri/orig/001.mgz \n mri_convert /Users/akilasekar/Desktop/Cambridge/Data/Sub01/sub1.fspgr.nii /Applications/freesurfer/7.1.1/subjects/sub_01/mri/orig/001.mgz reading from /Users/akilasekar/Desktop/Cambridge/Data/Sub01/sub1.fspgr.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0, -1, 0) j_ras = (0, 0, 1) k_ras = (1, 0, 0) writing to /Applications/freesurfer/7.1.1/subjects/sub_01/mri/orig/001.mgz... /Applications/freesurfer/7.1.1/subjects/sub_01/mri/transforms /Applications/freesurfer/7.1.1/subjects/sub_01 /Applications/freesurfer/7.1.1/subjects/sub_01 Started at Tue Mar 16 14:41:43 EAT 2021 Ended at Tue Mar 16 14:41:49 EAT 2021 #@#%# recon-all-run-time-hours 0.002 recon-all -s sub_01 finished without error at Tue Mar 16 14:41:49 EAT 2021 done It would great if you can help me out! Thank you! Akila
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