External Email - Use Caution Perfect! Thank you so much for the clarification.
Stay safe On Tue, Mar 16, 2021 at 11:53 PM Iglesias Gonzalez, Juan E. < jiglesiasgonza...@mgh.harvard.edu> wrote: > Dear Alex, > > As explained in the wiki, if you run the module on a FreeSurfer processed > subject, the output will be in the subject’s mri directory, and will be > called: hypothalamic_subunits_seg.v1.mgz > > So you could run something like: > > cd $SUBJECTS_DIR/<SUBJECT_NAME>/mri > > freeview nu.mgz hypothalamic_subunits_seg.v1.mgz > > > > If you ran the module on a raw t1 scan, then the output will be wherever > you specified with the flag -o > > > > Kind regards, > > > > Eugenio > > > > > > > > Juan Eugenio Iglesias > > Senior research fellow > > CMIC (UCL), MGH (HMS) and CSAIL (MIT) > > http://secure-web.cisco.com/1bFVqbSu5YkzvYL_x_m0f_DQcxx0pZQ8vp0u5Bxy2EBQbGbToWGK-wF62O3dsAjQW4L_UiqVdRONNu-gDz2SA65SFAs67GChhvGZbHe39NTU68i1DO0k3FK51fPTaffWcB3IyhBcaD1RzED6clFlJpHU9JHCTSSwfijZZQ1bwS-LmPM3IRNzJbALP55318jrSYPbJ4Tks1VVYQy8REzjYFAs66Db1vN7KXIYAsKn2Q6r9f4qsBVdDTynqgdTOaZtkKVFLGzvpEJyFh7uHTXyHrg/http%3A%2F%2Fwww.jeiglesias.com > > > > > > > > *From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Lab of > Autism and Developmental Neuroscience, Lab of Autism and Developmental > Neuroscience" <l...@email.gwu.edu> > *Reply-To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Date: *Tuesday, March 16, 2021 at 23:22 > *To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject: *[Freesurfer] Hypothalamus segmentation output > > > > * External Email - Use Caution * > > Dear Freesurfer experts, > > > > Hope that you all are well and stay safe. > > > > I would like some help figuring out the code to open the output for the > hypothalamus segmentation (via freeview). Does anyone have this info? I > didn't find it on the website. > > > > Thank you so much! > > > > All the best, > > Alex > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1H38lylt88AJLP0jL_vYdoopjyZHyqCy_wku5EU2mLyZqW5rT5Zj9tXkU5zuHYgeUvkup8DFaC1Go-eavFyTskXU6gJpETLv-YTrnJmMxtc-BmLwkzTo87MUU66dMbMT0kNvcgpg8DGfgw2FUHZHph_QcuWCdgg5nNrXFjx0iHjzUX2mibXJ5jhg3s3oMcvd_7pdQEgjsLn_NKC_WFrakW29b4KwaGnqGdB8g265etNjqheOkpc9bJcuW2QbeQTaQ196RRLyXhZJ5UHNifchvnA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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