Can you send /tmp/banu.tmp.decompressed.dcm.1TXZUy.dcmdjpeg.out ?
If that is not there any more, run it again and send the newly created file
On 4/4/2021 3:57 PM, Banu Femir wrote:
External Email - Use Caution
Dear Freesurfer Developers,
I'm trying to analyze a set of MRI data that I got via CD. Dicom files
did not have .dcm extension, so I used a program and they turned into
a .dcm image.
My reconall run for around 2 hours, after I got an error:
Counting frames
nframes = 481
nslices = 1
ndcmfiles = 481
PE Dir = UNKNOWN (dicom read)
Loading pixel data
JPEG compressed, decompressing
cd /home/banu/usr/local/freesurfer/subjects/sepsis1dicomwritebelow
fsdcmdecompress --i
/home/banu/Documents/Sepsis/yeni_dicom_write_below/F_000001.dcm --o
/tmp/banu.tmp.decompressed.dcm.1TXZUy --jpeg >&
/tmp/banu.tmp.decompressed.dcm.1TXZUy.dcmdjpeg.out
ERROR: 512, see /tmp/banu.tmp.decompressed.dcm.1TXZUy.dcmdjpeg.out for
more details
Linux banuf 4.15.0-51-generic #55-Ubuntu SMP Wed May 15 14:27:21 UTC
2019 x86_64 x86_64 x86_64 GNU/Linux
Before that, I got many Warnings about imagenumber, tag serial number,
seriesnumber, tag, ect. In case you want I can share the whole log
file. I am wondering if there was sth wrong with my .dcm format. If
yes, how I can solve this problem? It seems like there was sth wrong
with tags, but I really cannot solve the problem.
Many thanks!
Have a nice and healthy week!
Banu
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