Hi Katja,
Okay good to know. I will follow up off-list.
Best,
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Zoner, Katja
<katja.zo...@pennmedicine.upenn.edu>
Date: Tuesday, March 30, 2021 at 1:24 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] [External] Re: "ERROR: crypt() returned null with
4-line file" when running via Singularity
External Email - Use Caution
Hi Andrew,
After speaking with our compute cluster service providers, it seems like this
error is due to FIPS being enabled on the cluster. Are there any existing
solutions to FIPS conflicts with FreeSurfer?
Thanks!
Katja
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Hoopes, Andrew
<ahoo...@mgh.harvard.edu>
Sent: Saturday, March 27, 2021 4:19 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [External] Re: [Freesurfer] "ERROR: crypt() returned null with 4-line
file" when running via Singularity
Hi Katja,
I wonder if this is related to possible security settings. I can’t replicate
this, but can you send your license file so that we can narrow down the
possibilities? You can send it directly to my email, off-list.
Best
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Zoner, Katja
<katja.zo...@pennmedicine.upenn.edu>
Date: Monday, March 22, 2021 at 2:40 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] "ERROR: crypt() returned null with 4-line file" when
running via Singularity
External Email - Use Caution
Hi all,
I am trying to run a single subject through FreeSurfer 7.1.1 via Singularity
image (pulled from the FreeSurfer DockerHub) like this:
export SINGULARITYENV_FS_LICENSE=/mnt/22Q/images/license.txt
export SINGULARITYENV_SUBJECTS_DIR=/mnt/22Q/data/freesurfer
singularity exec --cleanenv -B /project/bbl_projects/22Q/:/mnt/22Q \
/project/bbl_projects/22Q/images/freesurfer_7.1.1.sif \
recon-all -s sub-17867 -i
/mnt/22Q/data/bids_directory/sub-17867/ses-22Q1/anat/sub-17867_ses-22Q1_T1w.nii.gz
-all
But it fails quickly with error message:
ERROR: crypt() returned null with 4-line file
Do you know what might be causing this error message? How can I address this?
Additional info:
1. FreeSurfer version: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551
2. uname -a: Linux singularity01 3.10.0-1127.8.2.el7.x86_64 #1 SMP Tue May
12 16:57:42 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
3. recon-all.log: see attached
See GitHub issue: MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
https://github.com/freesurfer/freesurfer/issues/848<https://secure-web.cisco.com/1ut10r0i0QuSlDil5z36vyz9khjKfY1Scbdqd9hofmPnzDpnN0bPBmojSGjIHi7yzY-uAiR9TwSegSq34pGGazlC4w7PY2qro7tebqzKCIDwTGzo0b7dGo_5WJsUXpEF8pnoBxLzE5qyK-Ip4LxSG2qYpeYTUe26cjH1b7slOniWz6RSxWjdwFtHm84K-HRyUCV5fxm82SyHP7wdwOdwxAVCjfNMXBfZFnqjbhknEIVYKcFpKgXkTKuzl2SdmuJhOfFiYNxkixGTo_DisMo8Qiw/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer%2Fissues%2F848>
[https://secure-web.cisco.com/1TDcdfVeSPTzDeg0asgP7Yy7WKhWmvgHB9T_fyDNBmSSR44igxbFcjkvEBwioJUXRaWvFZHtoGPQqrUbSlBypgDgQbDuBWjvd-22zMLp_ozjhIwKQzVLJKCp0yPoqA5Jl_pFvhR-3OKlIQ9D5gOx-1rSy9WaziDl1r-sKmOwEbyWlYPXOi1GYxFF_5VZ3ElEqF1XxMvU2JxTpTowEWPoVTRECmtbmBdJhnEkKiBKV2AlSQcbm-ZEJyL2cL-lSnLuPDlXjKSBdlNZgzeMLSL51ug/https%3A%2F%2Favatars.githubusercontent.com%2Fu%2F6330653%3Fs%3D400%26v%3D4]<https://secure-web.cisco.com/1ut10r0i0QuSlDil5z36vyz9khjKfY1Scbdqd9hofmPnzDpnN0bPBmojSGjIHi7yzY-uAiR9TwSegSq34pGGazlC4w7PY2qro7tebqzKCIDwTGzo0b7dGo_5WJsUXpEF8pnoBxLzE5qyK-Ip4LxSG2qYpeYTUe26cjH1b7slOniWz6RSxWjdwFtHm84K-HRyUCV5fxm82SyHP7wdwOdwxAVCjfNMXBfZFnqjbhknEIVYKcFpKgXkTKuzl2SdmuJhOfFiYNxkixGTo_DisMo8Qiw/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer%2Fissues%2F848>
`ERROR: crypt() returned null with 4-line file` when running via Singularity
image · Issue #848 ·
freesurfer/freesurfer<https://secure-web.cisco.com/1ut10r0i0QuSlDil5z36vyz9khjKfY1Scbdqd9hofmPnzDpnN0bPBmojSGjIHi7yzY-uAiR9TwSegSq34pGGazlC4w7PY2qro7tebqzKCIDwTGzo0b7dGo_5WJsUXpEF8pnoBxLzE5qyK-Ip4LxSG2qYpeYTUe26cjH1b7slOniWz6RSxWjdwFtHm84K-HRyUCV5fxm82SyHP7wdwOdwxAVCjfNMXBfZFnqjbhknEIVYKcFpKgXkTKuzl2SdmuJhOfFiYNxkixGTo_DisMo8Qiw/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer%2Fissues%2F848>
I am trying to run a single subject through FreeSurfer 7.1.1 via Singularity
image like this: export SINGULARITYENV_FS_LICENSE=/mnt/22Q/images/license.txt
export SINGULARITYENV_SUBJECTS_DIR=/mnt/22...
github.com
Thank you for any assistance!
Katja Zoner
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