Did you use mri_surf2surf to map the data from fsaverage to a surface in the
subject space first?
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Ren, Xueying
Sent: Monday, April 12, 2021 9:21 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] question about mapping fsaverage surface atlas to
subject's native volume space
External Email - Use Caution
External Email - Use Caution
Dear experts,
I am trying to convert an atlas which is in fsaverage surface space to each
subject's native volume space. However, the alignment seems off (e.g., in the
parietal lobe, see attached screenshot). I am not sure where the problem is.
Here is the code that I used:
tkregister2 --mov ${subj_dir}/${subj_id}/mri/rawavg.mgz --targ
${subj_dir}/${subj_id}/mri/orig.mgz --reg register.native.dat --noedit
--regheader
mri_surf2vol --surfval lh.Wang2015.mgz --hemi lh --subject fsaverage
--fillribbon --reg register.native.dat --template
${subj_dir}/${subj_id}/mri/001.mgz --o lh.Wang2015.native.nii.gz
Any help would be highly appreciated! Thank you!
Caroline
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
