Log file is attached. Thank you, Andrew
Andrew Russo
Clinical Research Coordinator
Multiple Sclerosis Imaging Lab
Massachusetts General Hospital
149 13th Street | Boston, MA 02129
617-726-7531
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
Sent: Tuesday, April 20, 2021 10:09 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] FA map registration to T1
can you send the bbr log file?
On 4/19/2021 2:29 PM, Russo, Andrew William wrote:
Hello FreeSurfer Developers,
I am registering FA maps to T1 for a group of subjects with MS and in many
cases the registration is poor for the anterior corpus callosum (attached),
cerebellum, pons, and temporal lobe. I am using the following commands
(FreeSurfer version 6.0):
bbregister \
--dti \
--reg diff2T1_reg.dat \
--mov eddy_corrected_b0.nii.gz \
--s subject_temp
mri_vol2vol \
--mov dtifit_FA.nii.gz \
--targ orig.mgz \
--o FA2T1.nii.gz \
--reg diff2T1_reg.dat
Do you have any suggestions for improving this registration?
Thank you,
Andrew
Andrew Russo
Clinical Research Coordinator
Multiple Sclerosis Imaging Lab
Massachusetts General Hospital
149 13th Street | Boston, MA 02129
617-726-7531
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diff2T1_reg.dat.log
Description: diff2T1_reg.dat.log
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