Hi Erika,
Can you untar the file you downloaded instead of the "HighSierra" version.
There was a small typo in the UpdateFreeview instructions that mentioned
high-sierra. The freeview you downloaded should work fine for 10.12
Best,
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Erika Nolan
<erika.no...@mail.mcgill.ca>
Date: Tuesday, May 18, 2021 at 2:57 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview Update using MAC
External Email - Use Caution
External Email - Use Caution
Hi Ruopeng,
Thank you for the quick reply.
When I attempt to untar Freeview:
erikanolan$ tar -xzvf
/Users/erikanolan/Downloads/freesurfer-darwin-macOS-HighSierra-dev-freeview.tar.gz
tar: Error opening archive: Failed to open
'/Users/erikanolan/Downloads/freesurfer-darwin-macOS-HighSierra-dev-freeview.tar.gz'
When I attempt to open a HCP .gii file on Freeview (also see attached
screenshot):
** invalid: gim version = 1
mrisReadGIFTIfile: GIFTI file /Users/erikanolan/Desktop/SULCAL PAINTING
7.1.1/103515/103515.L.pial.native.surf.gii is invalid!
MRISread failed
mrisReadGIFTIfile: GIFTI file /Users/erikanolan/Desktop/SULCAL PAINTING
7.1.1/103515/103515.L.pial.native.surf.gii is invalid!
Thank you,
Erika
_____________________________
Erika Nolan
Ph.D. Candidate
Clinical Psychology, Department of Psychology
Montreal Neurological Institute
McGill University
Montreal, Canada
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Wang, Ruopeng
<rwa...@mgh.harvard.edu>
Sent: May 18, 2021 2:50 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview Update using MAC
Hi Erika,
What error message do you get when you launch Freeview on your macOS 10.12?
Ruopeng
On May 18, 2021, at 1:57 PM, Erika Nolan
<erika.no...@mail.mcgill.ca<mailto:erika.no...@mail.mcgill.ca>> wrote:
External Email - Use Caution
External Email - Use Caution
Good afternoon,
I downloaded Freesurfer 7.1.1 and am trying to open HCP .gii files in Freeview.
I tried updating Freeview (MailScanner has detected a possible fraud attempt
from "secure-web.cisco.com" claiming to
behttps://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview<https://secure-web.cisco.com/1veSBR5ECpngEulfhl0eWcwLxUmMQ4QR1JG2qWSdPD48G13FOkK-R9TwjcBNWdJ2A9iyLUlkwF6x3qsI_Gy-365Zoj6Xq6m5UP7F27YwZzMa6N7wSWFG7mTRt5ih9OjVHlyM5-gD6y2DUIfnYZJsj7_hVAIP5hm7I3Xc7ygLvtlN3dDVf2elsgbpseQOr3vGGBkEs2F0L8XBcMYk1HOhDdqmnxzGpJTFRIgC0Mij_YCeJxbDhxm_cGqGxLi92zmR-GTyQKsr1F1hN7mk_upaPvg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FUpdateFreeview>)
using the instructions for MacOS but it fails:
Mac
1. Go into your $FREESURFER_HOME and create a backup of your existing
freeview app (this may require sudo access):
2. cd $FREESURFER_HOME
cp Freeview.app Freeview-backup.app
1. Download the dev, standalone freeview tarball from
here<https://secure-web.cisco.com/1-rTW8L4qktbL8zcQ8YGBhA2846k3Po3bbKwIzxjkbPFAKXqYiZng4E7TbL_oNNIh8w8yWq31ouz31YQB_a6aa4L-7rDROFhW8M9WVX6khqSxY3J4O47g_QO-Mi135VjhTYuW3s6eS4ooNURSfQV8DGcalmZm_VriUEnecF7ldqvi-SRSIrOIb3lPrg3OHzbthgG2DA7qODTT0c4I3OvtxBPCsGdNAxL2vOHb6yp1_L00ikk3AdR2qbyjiMZE2s9Dz-eKC1CEsImgTzov6zi1qA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2Ffreeview%2Ffreesurfer-darwin-macOS-dev-freeview.tar.gz>
1. Untar freeview within your $FREESURFER_HOME (this may require sudo):
5. cd $FREESURFER_HOME
tar -xzvf /path/to/freesurfer-darwin-macOS_HighSierra-dev-freeview.tar.gz
1. IMPORTANT: If you are replacing freeview in a freesurfer release LESS
than 7.0, then you must also remove the line "source
$FREESURFER_HOME/sources.csh" from the $FREESURFER_HOME/bin/freeview script
The tar file that downloads is " freesurfer-darwin-macOS-dev-freeview.tar" is
this file correct? My Mac is a MacOS Sierra (not HighSierra), version 10.12.6.
Is it possible for me to get a file that is compatible with my Mac?
Thank you for your help!!!
Erika
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