Generally, control points are the way to go here. It looks like you have
put a bunch of them in cortex though
On 5/21/2021 12:14 PM, Kadwani, Manorama wrote:
Hi,
I am trying to correct the white matter segmentation in the second
image shown below. It doesn't include chunks of the temporal lobe with
low intensity on both hemispheres.
I placed many control points on every slice in the brainmask.mgz file.
Then I re-ran recon-all using -autorecon2-cp argument. But the white
matter volume did not grow into those regions with control points. The
process completed without any errors.
Any idea on how I can include those regions in white matter?
I also tried to use 'mri_segment' for lowering the white matter low
limit to 60. That did include some parts of the missing lobes, but
also included grey matter from frontal and parietal lobes. So, that
approach was not ideal.
Thank you,
Manorama
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