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Yeah,you are right!
The prolem has been solved after modifying the 'bc' path.
Thank you very much!
Have a good day :)!
-----原始邮件-----
发件人:"Douglas N. Greve" <dgr...@mgh.harvard.edu>
发送时间:2021-06-02 05:52:10 (星期三)
收件人: freesurfer@nmr.mgh.harvard.edu
抄送:
主题: Re: [Freesurfer] Recon-all error :Segmentation fault (core dumped)
Actually, I think I see what the problem is. You apparently have a command
called "bc" in your path. mri_nu_correct.mni is trying to use the linux-native
bc command (a simple calculator usually located in /bin). What do you get when
you run
which bc
On 6/1/2021 9:59 AM, liub wrote:
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Thank you for your help !
I have run the command:
mri_nu_correct.mni --debug --i orig.mgz --o nu.mgz --uchar
transforms/talairach.xfm --n 2 --ants-n4 >& nucor.log
and got the nucor.log.
-----原始邮件-----
发件人:"Douglas N. Greve" <dgr...@mgh.harvard.edu>
发送时间:2021-06-01 08:35:38 (星期二)
收件人:freesurfer@nmr.mgh.harvard.edu
抄送:
主题: Re: [Freesurfer] Recon-all error :Segmentation fault (core dumped)
Not sure, can you try this
cd /home/liubing/FreeSurfer/data/test_recon/ANDI1/mri
mri_nu_correct.mni --debug --i orig.mgz --o nu.mgz --uchar
transforms/talairach.xfm --n 2 --ants-n4 >& nucor.log
and send the file nucor.log
On 5/28/2021 7:51 AM, liub wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to recon-all my NIfTI-1 data ,while after a few minutes of
running,there was an error:
mris_calc -o /dev/shm/tmp.mri_nu_correct.mni.897826/nu0.mgz
/dev/shm/tmp.mri_nu_correct.mni.897826/nu0.mgz mul
Segmentation fault (core dumped)
Command exited with non-zero status 1
Also when I ran the command "recon-all -all -s bert" using the official data in
*/freesurfer/subjects/bert ,it raised the same error. I googled this error,but
there's still no answer.I've attached the recon-all.log. The recon-all.log is
belong to bert and recon-all(1).log is belong to my data.
Here is my operating system info :
uname -a: Linux HEUBME.com 4.18.0-193.28.1.el8_2.x86_64 #1 SMP Thu Oct 22
00:20:22 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
Platform: CentOS Linux release 8.3.2011
FreeSurfer version: freesurfer-Linux-centos8_x86_64-7.1.1
Thank you for your kind help.
Best regards.
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