External Email - Use Caution I noticed the error and I fixed.
Thank you, Rosie On Fri, Jun 25, 2021 at 8:45 PM Rosalia Dacosta Aguayo <rdacos...@gmail.com> wrote: > Dear Freesurfer team, > > Sorry for posting this question but I have been trying different things > and nothing seems to work. > > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s > sub-001_ses-BSL -i sub-001_ses-BSL_T1w.nii -T2 sub-001_ses-BSL_T2w.nii > -T2pial -all > *ERROR: cannot find sub-001_ses-BSL_T1w.nii* > Linux rosalia-Lenovo-Y520-15IKBN 4.10.0-40-generic #44~16.04.1-Ubuntu SMP > Thu Nov 9 15:37:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s sub-001_ses-BSL exited with ERRORS at Fri 25 Jun 20:41:02 > CEST 2021 > > For more details, see the log file > To report a problem, see > http://secure-web.cisco.com/1S_tXX46F6eCH3NCIgrT8aFSHQtE5iRVch4TzSHJ1rabFMPf12PCbxPxV0hmzSPFnKQH2h_ZIRbeclyYCNfDisp2dSVcOXvwPHUJdIYjRHv6Vsov7IpKJr6qbV802bWbaa-rULRJeWd3pNU-7yYDfcFywDCfK2jib_vq0ikgjYpC20130veTe7NXMhlUv1H00JaBwihFTvd5BA0bfKI0fgDmXTk0hABvvhKUlnH4a0FD-GlixRLIds8aRAd-Lp82dd-pSoXhQuFq_Z_Jx_LMEJw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting > > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd ARTICO > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ ls > sub-001_ses-BSL sub-003_ses-BSL sub-005_ses-BSL > sub-002_ses-BSL sub-004_ses-BSL sub-006_ses-BSL > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ cd sub-001_ses-BSL/ > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO/sub-001_ses-BSL $ ls > sub-001_ses-BSL_T1w.nii sub-001_ses-BSL_T2w.nii > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO/sub-001_ses-BSL $ > > If I trying to run recon-all inside the subject folder it tells me that > this subject has already been run and if that it is a new subject, I should > change the name of the folder and the files. I do it, and it keeps giving > me the same error. > > I am out of ideas... > > >
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