External Email - Use Caution Hello Kiyotaka,
Please try refreshing your copy/install of the Ubuntu 7.2.0 distribution as the packages have been updated to fix the warning below. I think you were using the installer, so you could try the commands below to download and re-install with apt. (If you were using the tar file then just change the file name in the wget command to be freesurfer-linux-ubuntu18_amd64-7.2.0.tar.gz, expand it in the right location and skip the commands with sum, apt remove, apt install). .... with installer ... $ rm -f freesurfer_7.2.0_amd64.deb $ wget https://secure-web.cisco.com/1i8WchnZn-ZDMrXexp7WlIVIxgdWjuz06xq1yUvfYcAZHMRj7vvcmyXQcejVLrTtuxUG-dZz_GENMbgWB5YR1KePyPJp7DzdA7_d4GdS4KTLodaOA8ioa2UyCSFlQV9riwiRfFf9grezL7xNPnSKNRhPVc9f10sNwZ0OC5-aBCJ05ET9M0lwkGC7FX1-J8InvCcJrzlvZc6k_YDhdpakpELkThOZ1Tf4qYe99ddpGkavanEblQrb8cMHJoe1epVcvWkc-S21UKM64QbXtIeqQaw/https%3A%2F%2Fsurfer.nmr..mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer_7.2.0_amd64.deb $ sum freesurfer_7.2.0_amd64.deb 20191 3199044 $ sudo apt remove freesurfer .... output deleted .... $ apt install ./freesurfer_7.2.0_amd64.deb .... output deleted ... .... check environment ... $ export FREESURFER_HOME=/usr/local/freesurfer/7.2.0 $ source $FREESURFER_HOME/SetUpFreeSurfer.sh .... the output should have no warnings and you can also check ... $ env | grep MINC MINC_BIN_DIR=/usr/local/freesurfer/7.2.0/mni/bin MINC_LIB_DIR=/usr/local/freesurfer/7.2.0/mni/lib $ which nu_correct /usr/local/freesurfer/7.2.0/mni/bin/nu_correct - R. -------- freesurfer-linux-ubuntu18_x86_64-7.2.0-20210714-aa8f76b --------Setting up environment for FreeSurfer/FS-FAST (and FSL)FREESURFER_HOME /usr/local/freesurfer/7.2.0FSFAST_HOME /usr/local/freesurfer/7.2.0/fsfastFSF_OUTPUT_FORMAT nii.gzSUBJECTS_DIR /home/username/freesurfer/7.2.0/subjectsWARNING: MINC_BIN_DIR not defined. 'nu_correct' and other MINC tools are used by some Freesurfer utilities. Set NO_MINC to suppress this warning.WARNING: MINC_LIB_DIR not defined. Some Freesurfer utilities rely on the MINC toolkit libraries. Set NO_MINC to suppress this warning.FSL_DIR /usr/local/fsl =====
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