External Email - Use Caution Dear R,
Thank you very much! I followed your instructions, and it worked perfectly. Best regards, Kiyotaka On Thu, Jul 22, 2021 at 3:20 AM fsbuild <fsbu...@contbay.com> wrote: > Hello Kiyotaka, > > Please try refreshing your copy/install of the Ubuntu 7.2.0 distribution > as the packages have been updated to fix the warning below. > > I think you were using the installer, so you could try the commands below > to download and re-install with apt. (If you were using the tar file then > just change the file name in the wget command to be > freesurfer-linux-ubuntu18_amd64-7.2.0.tar.gz, expand it in the right > location and skip the commands with sum, apt remove, apt install). > > .... with installer ... > > $ rm -f freesurfer_7.2.0_amd64.deb > $ wget > https://secure-web.cisco.com/1FK_sXs4RH2RQpXvxlC81vWqvKNznb76Y5pxgR_orSVStzmiiJg8cCMSN_knoixqkk5nzBizJF5pgjYuljFPGf-W_5R6eKCok2vt5Sz1WIRwMqQFj8gXH4aVBW4pdHYLEJRxBQsuiMHDxCU8CxZX8d7DNZ-iFTk5K660F5iUlluHoISsEuNcPisLZbJjvEYRv7hGqRrnM8C5bo7BKMhf3PQWuQqdVQ80dDjzyn7VlNRzCsN-EZQxBRJGqlfYcAKPg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer_7.2.0_amd64.deb > $ sum freesurfer_7.2.0_amd64.deb > 20191 3199044 > $ sudo apt remove freesurfer > .... output deleted ... > $ apt install ./freesurfer_7.2.0_amd64.deb > .... output deleted ... > > ... check environment ... > > $ export FREESURFER_HOME=/usr/local/freesurfer/7.2.0 > $ source $FREESURFER_HOME/SetUpFreeSurfer.sh > .... the output should have no warnings and you can also check ... > $ env | grep MINC > MINC_BIN_DIR=/usr/local/freesurfer/7.2.0/mni/bin > MINC_LIB_DIR=/usr/local/freesurfer/7.2.0/mni/lib > $ which nu_correct > /usr/local/freesurfer/7.2.0/mni/bin/nu_correct > > - R. > > -------- freesurfer-linux-ubuntu18_x86_64-7.2.0-20210714-aa8f76b -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /usr/local/freesurfer/7.2.0 > FSFAST_HOME /usr/local/freesurfer/7.2.0/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /home/username/freesurfer/7.2.0/subjects > WARNING: MINC_BIN_DIR not defined. > 'nu_correct' and other MINC tools > are used by some Freesurfer utilities. > Set NO_MINC to suppress this warning. > WARNING: MINC_LIB_DIR not defined. > Some Freesurfer utilities rely on the > MINC toolkit libraries. > Set NO_MINC to suppress this warning. > FSL_DIR /usr/local/fsl > ===== > >
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