Hi Ammar
In the mri dir there are segmented volumed called aseg.mgz and aparc+aseg.mgz
where every voxel has an index into the FreeSurferColorLUT.txt lookup file
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Ammar Shujaa
Sent: Tuesday, August 3, 2021 4:19 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] How to extract individual structures after recon-all
External Email - Use Caution
Hello FreeSurfur Developers,
A have completed the segmentation of T1 MRI image using recon all.
I want to know how to get the segmentation of specific structures using mri and
surf folders. For example, Thalamus, prefrontal lobe, grey matter and then save
each one, so I can use them for machine learning later.
Looking forward to hearing from you.
Best regards,
Ammar Shujaa Addin
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